The PhyloDAG method infers phylogenetic networks from DNA sequences.
PhyloDAG result with data from a controlled hybridization experiment involving two families (labelled VIL and COL) of Armeria plants and a hybrid family (labelled F1).
For more information, see
- Q. Nguyen and T. Roos, (2015). Likelihood-based inference of phylogenetic networks from sequence data by PhyloDAG,in Proc. 2nd International Conference on Algorithms for Computational Biology (AlCoB-2015), LNBI 9199, Springer, pp. 126–140.
- J. Tehrani, Q. Nguyen, and T. Roos, (2016). Oral fairy tale or literary fake? Investigating the origins of Little Red Riding Hood using phylogenetic network analysis, to appear in Digital Scholarship in the Humanities.
PhyloDAG.zip — zip compressed source package (R and cpp code); see the readme.txt for instructions